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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019278.1_1430_1507_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1430 - 1507
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CCCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGGGCCCTAATA
Flanking Amino Acid:
EQSLSNPFQQALTVLQRSLT
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
80
0.75
1
78.6
31
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
54.4
0.14
1.8
64.65
42

Associated Gene:

Gene:
TTYH2
Ensembl Gene ID:
ENSAPLG00000022865
Chromosome:
PEDO01019278.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045908
54 - 1880
1827
ENSAPLT00000017224
507 - 2281
1775