About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019281.1_1802_1875_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
1802 - 1875

Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGC|GTGAGTATC

5'SS Class:
major

3'SS Sequence:
TCCTGCTCCCCAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTCTAAA

U12 Branch Point Sequence:
CTGCTCTAAAAA

Flanking Amino Acid:
LVVILKILPTLEAVAALGNK

Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67.8
0.42
1.3
72.2
39.5

Major BPS
73
0.57
1
73.6
28.6

Major PPT
73.7
0.53
0.8
65
36.4

Minor 5ss
35.8
-1.6
2.8
41.3
38.3

Minor BPS
48.2
-0.1
1.8
57.2
42.3

Associated Gene:

Gene:
ILF2

Ensembl Gene ID:

Chromosome:
PEDO01019281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

212 - 4424
4213