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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019281.1_2169_2277_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2169 - 2277
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
TTGCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAAAAA
U12 Branch Point Sequence:
TTTGGGTGAAAA
Flanking Amino Acid:
NLRKLDPELHLDIKVLQSAL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.33
1.4
61.7
43
Major BPS
48.5
-0
1.2
53.7
38.6
Major PPT
86.7
0.83
0.8
84.9
30
Minor 5ss
33.7
-1.9
3.7
52.4
44.6
Minor BPS
42
-0.6
2.5
61.18
44.7

Associated Gene:

Gene:
ILF2
Ensembl Gene ID:
ENSAPLG00000016146
Chromosome:
PEDO01019281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016871
212 - 4424
4213