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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019281.1_2357_2485_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2357 - 2485
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TCGTCTTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAG
U12 Branch Point Sequence:
GCGTTATGAGCT
Flanking Amino Acid:
RWFEENASQSTVKVLIRLLK
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
74.8
38.1
Major BPS
60.7
0.27
1.6
59.7
46.7
Major PPT
76
0.59
1
68.7
42
Minor 5ss
39.7
-1.1
2.9
48.5
41.2
Minor BPS
44.3
-0.3
1.9
58.42
44.3

Associated Gene:

Gene:
ILF2
Ensembl Gene ID:
ENSAPLG00000016146
Chromosome:
PEDO01019281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016871
212 - 4424
4213