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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019281.1_2802_2888_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2802 - 2888
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
CTTTGTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
GCTGCCTAAAAA
Flanking Amino Acid:
RQPLALNIAYRRCLQILAAG
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
83.3
0.75
0.8
77.4
31.4
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
50
-0
1.9
61
44.9

Associated Gene:

Gene:
ILF2
Ensembl Gene ID:
ENSAPLG00000016146
Chromosome:
PEDO01019281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016871
212 - 4424
4213