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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019307.1_299_590_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
299 - 590
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGTGTCCC
5'SS Class:
major
3'SS Sequence:
TCATCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCT
Flanking Amino Acid:
HVLKPVAYGMLPYKMGILV
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
38.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
82
0.72
0.8
80.9
30.8
Minor 5ss
38.6
-1.3
2.9
49.7
39.7
Minor BPS
72.1
0.77
1.8
92.57
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019953
Chromosome:
PEDO01019307.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039822
270 - 732
463