Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019318.1_5926_7046_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5926 - 7046

Intron Length:

1121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CGCCCCTGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

CGCCCCTGCACA

Flanking Amino Acid:

RRFPHHRPVPGSSLEPQESS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

52.1

0.05

1.3

41.8

Major PPT

62.3

0.28

0.9

55.7

33.7

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

46.6

-0.2

1.9

54.35

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024244

Chromosome:

PEDO01019318.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001897

5784 - 10133

4350