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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019318.1_7233_7527_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7233 - 7527
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
GGTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATACCAT
U12 Branch Point Sequence:
TCAGAGGGGACA
Flanking Amino Acid:
TGFEFNIMVVGQSGLGKSTM
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.2
39.6
Major BPS
56.8
0.17
1.3
66.9
39.3
Major PPT
66.5
0.37
0.9
58.7
38.3
Minor 5ss
34
-1.8
3.4
48.7
47
Minor BPS
31.1
-1.4
2.4
40.12
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024244
Chromosome:
PEDO01019318.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001897
5784 - 10133
4350
ENSAPLT00000040998
1059 - 12006
10948
ENSAPLT00000038665
1059 - 12006
10948
ENSAPLT00000027223
1059 - 12006
10948