About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019318.1_7836_7931_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7836 - 7931
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
CCTGCGTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CCTGCGTCACCA
Flanking Amino Acid:
GFGDQINNENCWDPIIKYIN
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
57.5
42.6
Major BPS
79
0.72
1
69
38.9
Major PPT
63.4
0.3
1
54.6
40.2
Minor 5ss
35.8
-1.6
3.5
46.4
44.5
Minor BPS
40.1
-0.7
2.4
50.44
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024244
Chromosome:
PEDO01019318.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038665
1059 - 12006
10948
ENSAPLT00000027223
1059 - 12006
10948
ENSAPLT00000001897
5784 - 10133
4350
ENSAPLT00000040998
1059 - 12006
10948