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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019318.1_8263_8348_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8263 - 8348
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
CCGTGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CGTCTCACACCC
Flanking Amino Acid:
LEERAEFKQRIQQDLKAHAI
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.8
37.7
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
65.2
0.34
0.9
57.7
33.3
Minor 5ss
23.6
-3
3.2
21.4
37.4
Minor BPS
40.8
-0.7
1.9
49.43
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024244
Chromosome:
PEDO01019318.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001897
5784 - 10133
4350
ENSAPLT00000040998
1059 - 12006
10948
ENSAPLT00000038665
1059 - 12006
10948
ENSAPLT00000027223
1059 - 12006
10948