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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019318.1_8445_8523_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8445 - 8523
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGATA
5'SS Class:
major
3'SS Sequence:
CCTGGGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTGCAC
U12 Branch Point Sequence:
TGACCGTGCACC
Flanking Amino Acid:
DDRLLNNVIREKIPFAVVGA
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
74.8
37
Major BPS
45.1
-0.3
1.4
52.4
43.3
Major PPT
62.1
0.27
0.9
53.6
36.7
Minor 5ss
30
-2.3
3.2
31.2
42.7
Minor BPS
41.5
-0.6
2.4
54.69
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024244
Chromosome:
PEDO01019318.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040998
1059 - 12006
10948
ENSAPLT00000038665
1059 - 12006
10948
ENSAPLT00000027223
1059 - 12006
10948
ENSAPLT00000001897
5784 - 10133
4350