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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019344.1_1283_1718_F

Intron Information:

Intron Rank:
140026
Intron Class:
major
Intron Phase:
Intron Coordinates:
1283 - 1718
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AAGAGTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
65.3
40.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
31.1
-2.2
3.3
37.7
42.2
Minor BPS
51.2
0.03
1.8
59.47
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025278
Chromosome:
PEDO01019344.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044422
801 - 2490
1690