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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019352.1_675_763_R

Intron Information:

Intron Rank:
150000
Intron Class:
major
Intron Phase:
Intron Coordinates:
675 - 763
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCAGG
5'SS Class:
major
3'SS Sequence:
CGTCTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAAAC
U12 Branch Point Sequence:
TCGGCACAAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
59.7
46.7
Major BPS
48.9
-0
0.9
54.6
27.1
Major PPT
68.7
0.42
0.9
61.5
34.9
Minor 5ss
31.9
-2.1
3.1
39.2
46.3
Minor BPS
39.7
-0.9
2.2
44.63
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028245
Chromosome:
PEDO01019352.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037455
417 - 1390
974