Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019392.1_2228_2446_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2228 - 2446

Intron Length:

219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAACGGCC

5'SS Class:

major

3'SS Sequence:

CTCTGCCGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAC

U12 Branch Point Sequence:

AGCACTGGAGCT

Flanking Amino Acid:

HRIWVHSCHIGDALSEEASK

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.2

59.8

41.3

Major BPS

57.5

0.19

1.1

48.8

38.1

Major PPT

0.36

57.3

38.6

Minor 5ss

36.5

-1.5

3.6

51.5

45.3

Minor BPS

38.9

-0.7

2.1

52.62

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024789

Chromosome:

PEDO01019392.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020363

21 - 3520

3500