Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019404.1_6997_7084_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6997 - 7084

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCACG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCGCTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTTAG

U12 Branch Point Sequence:

TGGGGCGGATTT

Flanking Amino Acid:

KTKNPEDFADSHLAEMLFLM

Intron Amino Acid Position:

368

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.4

40.3

Major BPS

48.8

-0

1.6

49.4

Major PPT

65.5

0.35

60.6

35.2

Minor 5ss

34.3

-1.8

2.8

40.4

45.5

Minor BPS

33.8

-1.1

2.3

48.67

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024896

Chromosome:

PEDO01019404.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018744

2793 - 13818

11026

ENSAPLT00000035118

2793 - 13818

11026