Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019414.1_648_835_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

648 - 835

Intron Length:

188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTTTA

5'SS Class:

major

3'SS Sequence:

TTCCCCCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAA

U12 Branch Point Sequence:

TAAAAATAAACT

Flanking Amino Acid:

AFFFSSYSTKDFLFQQTMLR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

77.9

32.4

Major BPS

69.8

0.49

70.3

31.8

Major PPT

78.9

0.65

0.7

69.8

Minor 5ss

46.2

-0.4

2.4

58.8

45.7

Minor BPS

45.8

-0.2

2.1

65.68

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030527

Chromosome:

PEDO01019414.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048403

499 - 6350

5852