Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019461.1_1169_1267_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1169 - 1267

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGCACC

5'SS Class:

major

3'SS Sequence:

CACCCCTCGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

TCCCCCCCACCC

Flanking Amino Acid:

TNDGVLSVAKPLDHEVRDRF

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

65.8

40.2

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

62.5

0.28

57.5

32.9

Minor 5ss

33.8

-1.8

3.1

43.2

44.2

Minor BPS

42.7

-0.5

2.1

52.85

44.5

Associated Gene:

Gene:

CDH15

Ensembl Gene ID:

ENSAPLG00000025501

Chromosome:

PEDO01019461.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047263

28 - 2737

2710