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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019483.1_1268_2846_R

Intron Information:

Intron Rank:
144256
Intron Class:
major
Intron Phase:
Intron Coordinates:
1268 - 2846
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
CTTTCCTACACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
71.3
0.53
1
61.3
37
Major PPT
79.3
0.66
0.8
73.4
36.9
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
61.8
0.45
2.1
83.33
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024867
Chromosome:
PEDO01019483.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021231
385 - 3308
2924