Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019514.1_885_985_F

Intron Information:

Intron Rank:

134360

Intron Class:

major

Intron Phase:

Intron Coordinates:

885 - 985

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTGTC

5'SS Class:

major

3'SS Sequence:

TCTTTCAGGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAG

U12 Branch Point Sequence:

CTCTCTTTCAGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

73.5

Major BPS

63.7

0.34

1.6

39.9

Major PPT

69.7

0.44

1.1

70.2

40.1

Minor 5ss

-1.6

3.6

48.3

42.5

Minor BPS

47.5

-0.3

2.1

53.9

47.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022220

Chromosome:

PEDO01019514.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039105

21 - 1902

1882