Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019561.1_1798_2134_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1798 - 2134

Intron Length:

337

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

CTGTGTCCCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

GGGTCCTCACGC

Flanking Amino Acid:

KQDIASVVCELGVDGLIVTN

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

72.4

0.56

73.5

32.5

Major PPT

72.8

0.51

0.9

69.6

36.8

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

44.5

-0.4

2.1

52.03

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015238

Chromosome:

PEDO01019561.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015876

368 - 2682

2315