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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019561.1_568_1090_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
568 - 1090
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGACAA
5'SS Class:
major
3'SS Sequence:
GTCTGTGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCAGAC
U12 Branch Point Sequence:
TCCTGCTGCACT
Flanking Amino Acid:
RQETQRKLTGAGMPLGVNLG
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
65.7
35.3
Major BPS
51.9
0.05
1
50
35.5
Major PPT
70.3
0.46
1
61.4
44.6
Minor 5ss
26
-2.8
2.9
27.1
37.5
Minor BPS
46.8
-0.1
2.3
68.08
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015238
Chromosome:
PEDO01019561.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015876
368 - 2682
2315