Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019568.1_2438_2517_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2438 - 2517

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCTGG

5'SS Class:

major

3'SS Sequence:

CTGATCCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

ACCCCCTGACCC

Flanking Amino Acid:

MAVTAYQNHRITQLKIASNP

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

56.7

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

73.4

0.53

0.9

66.2

35.7

Minor 5ss

37.4

-1.4

38.2

46.7

Minor BPS

-0.1

1.8

54.95

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026250

Chromosome:

PEDO01019568.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047590

1088 - 2804

1717