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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019585.1_421_555_R

Intron Information:

Intron Rank:
131691
Intron Class:
major
Intron Phase:
Intron Coordinates:
421 - 555
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TGTGTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGGAT
U12 Branch Point Sequence:
TTCACCTGCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
51.3
0.03
1.4
52.7
43.2
Major PPT
76
0.58
0.9
69.7
36.7
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
47.5
-0.3
2
56.72
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018036
Chromosome:
PEDO01019585.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034757
21 - 1351
1331
ENSAPLT00000031677
222 - 1351
1130
ENSAPLT00000047789
21 - 1351
1331