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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_10605_10845_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10605 - 10845
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
GCCAGTGCTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAAGA
Flanking Amino Acid:
TTQYSRAVFDGWPFPGGCQY
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
50.9
47.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
58.8
0.2
1
53.9
41.4
Minor 5ss
32.3
-2
3
39.4
45.9
Minor BPS
58
0.25
1.9
70.77
41.8

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019409
1877 - 69277
67401