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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_10605_11012_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10605 - 11012
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
TTGTGCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
ATGTCCCGAGCT
Flanking Amino Acid:
TTQYSRAVFDGCQYYYLPWG
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
50.9
47.3
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
76.4
0.59
0.9
66.7
40.6
Minor 5ss
32.3
-2
3
39.4
45.9
Minor BPS
48.9
-0
2
72.56
43.7

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033623
1877 - 16087
14211
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667