About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_11233_13999_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11233 - 13999
Intron Length:
2767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAAGTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTCTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
AGCTGCTGACAC
Flanking Amino Acid:
RGGDGGHLRAGVPLPDVLGK
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.4
63.7
43.1
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
75.1
0.57
0.8
69.2
31.4
Minor 5ss
37
-1.5
3.5
47.5
48
Minor BPS
40.8
-0.7
2.1
47.58
41.5

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033623
1877 - 16087
14211