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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_16270_16502_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16270 - 16502
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGACG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGGAT
U12 Branch Point Sequence:
TTGGTTGGGATC
Flanking Amino Acid:
IQMADAYTDVNGEKVLHKDE
Intron Amino Acid Position:
924

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
68.8
41.8
Major BPS
56.3
0.16
1.6
57.1
49.4
Major PPT
78.8
0.65
0.8
73.3
31.7
Minor 5ss
32.7
-2
3.1
38
40.8
Minor BPS
39.2
-0.8
2
48.19
36.8

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667