About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_16609_16992_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16609 - 16992
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGAA
5'SS Class:
major
3'SS Sequence:
TTTTGTCCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GCCTCTTCACCC
Flanking Amino Acid:
TDLNRAVDEKGWEYGITIPP
Intron Amino Acid Position:
959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.8
35.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
70.2
0.45
1
68.5
37.7
Minor 5ss
28
-2.5
3.5
37.9
46.9
Minor BPS
47.6
-0.2
1.8
54.58
43.9

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667