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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_1928_2407_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1928 - 2407
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCCTCCTGATGC
Flanking Amino Acid:
KNNVNPVWNEGFEWDLKGTA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
79.5
0.66
0.7
73.3
25
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
47.6
-0.2
2
58.6
46.3

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741