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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_41706_42361_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41706 - 42361
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGACAG
5'SS Class:
major
3'SS Sequence:
CGTCTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGGCAT
U12 Branch Point Sequence:
TGTGGCTGAGCC
Flanking Amino Acid:
DDPSVVGEFKGSFRIYPLPD
Intron Amino Acid Position:
1157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
60.3
40.1
Major BPS
43.8
-0.3
1.5
49.1
46.3
Major PPT
79.7
0.67
0.8
73
31.8
Minor 5ss
32
-2.1
3
37.9
47
Minor BPS
45.3
-0.3
2.1
60.02
44.8

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667