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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_42518_44469_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42518 - 44469
Intron Length:
1952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
TGCCCATCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCATTTATT
Flanking Amino Acid:
GLQPKDSNGKCDPYVKISVG
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.9
0.54
0.9
69.9
35.5
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
59.8
0.39
1.9
83.13
37.4

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667