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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_44562_46540_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44562 - 46540
Intron Length:
1979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTGCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTTTTTTGCACA
Flanking Amino Acid:
LPCTLEPVFGKMFELSCTLP
Intron Amino Acid Position:
1239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.5
0.73
0.8
79.2
32.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
49.9
-0
1.9
67
40.1

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667