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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_4710_4950_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4710 - 4950
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
GCCCGCTGAGCT
Flanking Amino Acid:
PLSNKPQDFQIRVRVIEGRQ
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
74.9
0.56
0.9
68.5
31.8
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
42.5
-0.4
2
54.99
46.3

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667