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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_47385_49544_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47385 - 49544
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
TGATCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTGCTCTGATCT
Flanking Amino Acid:
REQEYILSELEDGKPVNPHL
Intron Amino Acid Position:
1344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
65.4
40.4
Major BPS
79
0.72
1
69
38.9
Major PPT
75.5
0.57
1
69.3
41.5
Minor 5ss
29.1
-2.4
3.5
32.5
42.6
Minor BPS
53.7
0.19
1.7
74.01
42.6

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401