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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_5338_5459_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5338 - 5459
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCGC
5'SS Class:
major
3'SS Sequence:
TCTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
GCTGCACTCACT
Flanking Amino Acid:
ELFDAPIFITVVDSRSFRAD
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
54.4
44.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
82.8
0.74
0.7
77.1
24.8
Minor 5ss
33.3
-1.9
3.1
42.7
44.3
Minor BPS
42.7
-0.4
2.3
62.42
47

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003833
1877 - 69277
67401