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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_55042_63287_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55042 - 63287
Intron Length:
8246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GGTCTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTGGTCTGATTT
Flanking Amino Acid:
AEQMCYIAKKEHFWSLDKTE
Intron Amino Acid Position:
1500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
67.1
0.39
1
62.9
43
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
45.7
-0.2
1.8
59.43
44.8

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667