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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_63388_64832_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63388 - 64832
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGGAC
U12 Branch Point Sequence:
CTTGGGTTAAGG
Flanking Amino Acid:
NDKFSFDDYLGSIQMDLNRM
Intron Amino Acid Position:
1533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
46.8
-0.2
1.4
43.4
39.2
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
40.6
-0.8
2.6
50
50

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401