About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_6580_6711_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6580 - 6711
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CTTTTCCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAG
U12 Branch Point Sequence:
GTCCCCGCAGCC
Flanking Amino Acid:
KIFKAEDLPQMDDAVMDNVR
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
75
35.2
Major BPS
44.5
-0.3
1.6
55.8
41.7
Major PPT
82.4
0.73
0.7
77.4
24.5
Minor 5ss
34.4
-1.8
3.4
45.6
43.6
Minor BPS
41.4
-0.6
2.3
53.01
44.1

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667