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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_66300_69211_F

Intron Information:

Intron Rank:
42
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
66300 - 69211
Intron Length:
2912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGAGGG
5'SS Class:
major
3'SS Sequence:
ACCTGACATCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTCGAT
U12 Branch Point Sequence:
CCAACCTGACAT
Flanking Amino Acid:
FLGIFIYAFPKPFRQQTYNA
Intron Amino Acid Position:
1679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
52.2
45
Major BPS
61.4
0.28
1.3
61.8
44.5
Major PPT
50.9
0.02
1.1
46.3
39.5
Minor 5ss
29.2
-2.4
3.5
38.4
46.6
Minor BPS
44.3
-0.3
1.8
55.72
45.7

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667