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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_6816_7111_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6816 - 7111
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
CCCACACCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAGAA
U12 Branch Point Sequence:
GCTCCCACACCT
Flanking Amino Acid:
FVEVSFAGKMLYSRILEKNA
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
59.3
40.2
Major BPS
54.8
0.12
1.2
52.7
43.2
Major PPT
65.7
0.35
0.9
54.4
35.4
Minor 5ss
31.4
-2.1
3.3
37.8
42.4
Minor BPS
44.7
-0.3
2.1
63.75
45.7

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667