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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_7181_7263_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7181 - 7263
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
GCTCTCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CACCGCTCACCG
Flanking Amino Acid:
WNQCLTLPAMFPSMCEKMRI
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
77.1
0.61
0.8
68.6
37.2
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
38.7
-1
2.1
37.78
44.6

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000035668
1611 - 69277
67667