About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_7181_8013_F


Intron Information:

Intron Rank:
12

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
7181 - 8013

Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTGAGCACC

5'SS Class:
major

3'SS Sequence:
CATTTGGGACGAG|A

3'SS Class:
degenerate_major

U2 Branch Point Sequence:
GATGCAT

U12 Branch Point Sequence:
GTGTTTGGGACA

Flanking Amino Acid:
WNQCLTLPAMTWPCFRDRLT

Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.7
0.65
1
67.6
37.6

Major BPS
49.8
-0
1.5
63.4
44.3

Major PPT
44.7
-0.3
1.7
43.2
46.2

Minor 5ss
35.3
-1.7
2.8
41.4
39.1

Minor BPS
43.3
-0.5
2
54.46
38.6

Associated Gene:

Gene:
DYSF

Ensembl Gene ID:

Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

537 - 69277
68741

537 - 69277
68741