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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_7308_8030_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7308 - 8030
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GGCCGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATGCAT
U12 Branch Point Sequence:
GCATTTGGGACG
Flanking Amino Acid:
CEKMRIRVTDWDRLTHNDII
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
49.8
-0
1.5
63.4
44.3
Major PPT
66.1
0.36
1
60.7
44.7
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
39.4
-0.9
2
39.35
38.4

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000044999
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000033294
1877 - 69277
67401