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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019610.1_9865_10127_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9865 - 10127
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTCG
5'SS Class:
major
3'SS Sequence:
GTCTACCCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGGTGCTGACCC
Flanking Amino Acid:
DPYETLNLGKGEGVAYRGRV
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
62.5
38.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
57.1
0.16
1
53.2
36.7
Minor 5ss
31
-2.2
3.2
38.5
46.7
Minor BPS
44.2
-0.4
2.1
52.7
44.3

Associated Gene:

Gene:
DYSF
Ensembl Gene ID:
ENSAPLG00000003642
Chromosome:
PEDO01019610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019409
1877 - 69277
67401
ENSAPLT00000042663
1611 - 69277
67667
ENSAPLT00000019369
537 - 69277
68741
ENSAPLT00000035668
1611 - 69277
67667
ENSAPLT00000003833
1877 - 69277
67401
ENSAPLT00000033294
1877 - 69277
67401
ENSAPLT00000026611
537 - 69277
68741
ENSAPLT00000044999
1611 - 69277
67667