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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019618.1_178_861_R

Intron Information:

Intron Rank:
133241
Intron Class:
major
Intron Phase:
Intron Coordinates:
178 - 861
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.3
0.82
0.7
81.5
29.3
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
73
0.8
1.6
87.15
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018929
Chromosome:
PEDO01019618.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043874
21 - 1827
1807