Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019635.1_996_1071_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

996 - 1071

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGATG

5'SS Class:

strong_major

3'SS Sequence:

GCTTGTCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAA

U12 Branch Point Sequence:

CCCCCCCAACCC

Flanking Amino Acid:

RISAAEAKAAGLVSKVFPVD

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

73.4

43.3

Major BPS

45.3

-0.2

1.2

35.2

Major PPT

67.3

0.39

0.9

58.5

38.4

Minor 5ss

34.5

-1.8

3.5

47.3

48.3

Minor BPS

-0.8

2.1

43.84

44.1

Associated Gene:

Gene:

ECHS1

Ensembl Gene ID:

ENSAPLG00000014208

Chromosome:

PEDO01019635.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041909

26 - 1487

1462

ENSAPLT00000014809

26 - 1487

1462