Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019660.1_404_876_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

404 - 876

Intron Length:

473

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

TTTCCCACCACC

Flanking Amino Acid:

VLIFISLIAHGHTHGPDSCN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

65.6

40.2

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

84.1

0.77

0.7

79.5

26.1

Minor 5ss

32.7

-2

3.1

41.7

44.2

Minor BPS

47.8

-0.1

2.2

69.68

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025623

Chromosome:

PEDO01019660.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048466

21 - 1177

1157