About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019738.1_3936_4353_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3936 - 4353
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
GTTCTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
CTCTCCTCCATG
Flanking Amino Acid:
MPSCRGAKEMTFSLKCLKNK
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
59.5
39.8
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
79.7
0.67
0.8
70.3
36.3
Minor 5ss
36.5
-1.5
2.8
41.1
39
Minor BPS
47.9
-0.3
2.1
54.83
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021091
Chromosome:
PEDO01019738.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026679
2248 - 5721
3474