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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019738.1_5025_5135_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5025 - 5135
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAAATGA
5'SS Class:
major
3'SS Sequence:
CTTTGCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
ATGGGCACAACA
Flanking Amino Acid:
LATIDSQEDLRFLLRYGHAL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.2
55.9
37.7
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
85.3
0.8
0.8
76.7
37.4
Minor 5ss
33.2
-1.9
3
36.8
42.2
Minor BPS
42.3
-0.5
2.2
54.83
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021091
Chromosome:
PEDO01019738.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026679
2248 - 5721
3474