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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019794.1_936_1165_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
936 - 1165
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTGCCACCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GAAGCAGTGACC
Flanking Amino Acid:
LIGFVYPAYVSIKAIESSSK
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
65
0.34
0.9
54.8
35.4
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
41.5
-0.6
2.2
49.31
40.7

Associated Gene:

Gene:
REEP6
Ensembl Gene ID:
ENSAPLG00000011207
Chromosome:
PEDO01019794.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011662
128 - 2191
2064